Yep I have FE2 on Win 7 64, intel i7, Ati 5700
The Mods work as in SF2 on here - so its strange that somethings are not appearing. Did you move the mods manually in? -
1. Cut the folder called MOD out and stick it on your desktop - there is a good chance that could be causing problems - can the JSME be set to save the mods elsewhere?
2. Check they are not in subfolders - like this
\Objects\Aircraft\SE5a\SE5a
that wont work
3. What patch are you running?
4. Here is what I would try in case the options.ini file has been porked - cut the whole FirstEagles 2 folder
C:\Users\Ralph\Saved Games\ThirdWire\FirstEagles2
and paste it onto your desktop. So you are left with no \Saved Games\ThirdWire\FirstEagles2 folder.
Run the game - it will create a new FirstEagles2 folder - exit the game and move back 1 mod (ie the terrains)only from the FirstEagles folder you saved on the desktop - then test it .
5. Why do you need the JSME - what does it do exactly?